PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129311_P02
Common NameFAR1.10, LOC100381780
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 899aa    MW: 101760 Da    PI: 6.7738
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129311_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1851.2e-26112199190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+la
  GRMZM2G129311_P02 112 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLA 199
                        6********************97766.****************9999.999*************************************97 PP
2FAR184.71.4e-26241327189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        +fY+ YA ++GFsvr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ +++k++vt++++ HnH+l
  GRMZM2G129311_P02 241 EFYSMYAGKIGFSVRRASMTVN-NENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNEKYQVTEFVTCHNHQL 327
                        6****************99998.6666****************9998.99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-24112199IPR004330FAR1 DNA binding domain
PfamPF031016.0E-23241327IPR004330FAR1 DNA binding domain
PfamPF105511.1E-23444538IPR018289MULE transposase domain
PROSITE profilePS5096610.781712759IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-7712758IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-7734761IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MPSAPGEKDP QVIPRPATGP PLVQTLTPVN ATGSPAIDPR LAQPSWPGHV VLLRPCAAWP  60
PHLPVPLLLP HQNVDALEDV AAADVNPAID SCDEKMLPKV NMLFDGESDA YEFYNAYAEK  120
VGFFVRRSTL WTTSKNIITR RTFVCSREGF REKKKGAKEA KCPRPETRIG CPASLTIRLT  180
ANGKYRLTEF VPNHNHQLAT ASTVHMLKTK KIRRKARAAR ENLADDTVST PEFENEDEAY  240
EFYSMYAGKI GFSVRRASMT VNNENVITRR MFVCSKEGFR EKKRGAKRVK KPRPETRTGC  300
PACMVIRLGT NEKYQVTEFV TCHNHQLGAA AASDLVMASG STENDQDDGF DQADRSPDDS  360
VHKQNLIYGS TTLSSLEGRS CKRYKYTKTP RSGDVGATLE YLQKVQHDNP SFFYAVKSDD  420
DGNFTNFFWA DSKSIVDFFH FGDVVCFDSG YALQGYDRPL ALFTGVNHHK QTVIFGAAII  480
YDESKEAFQW LLDTFKMAMN GTHPKTLLTD RSVALSEAVA ATLPATAHRY CVWQIYQNAL  540
QQLSQAFHGS KTLECNFKRC LFDCEDEDEF VTAWKEMLEK YDLEDNQWLA DLFSIKEKWA  600
LAYGRDAFYA DMKSVQQKES LTSELKKHLS LECDLLNFFE QFERLLCDRR SAEMEADVNA  660
NQSTKKPPSM RMLRQAANAY TPSAFKMFER EFELYMDCML YICGEMSTIF EYRISVEDKS  720
RDHFVKFDSL NSMMNCTCKT FEFIGIPCRH MLKVLDMRNI KDLPAQYIMK RWRKDAKSGS  780
SNGGCAFLFD GDPDFSHIKR YNFLCRMFSV AAARAATSDE SFAYMENQSN ILMDQIEQVI  840
QTRPPDIADL IGANCDRTQN PVDNIVAEGI QSHTNFLSGS TDGSLTFPFT LGAGTLDYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.292050.0endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129311
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129311_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622350.0BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168050.10.0uncharacterized protein LOC100381780
RefseqXP_020396203.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396204.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396205.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396206.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396207.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396208.10.0FAR1-domain family sequence isoform X1
TrEMBLC0HIS90.0C0HIS9_MAIZE; FAR1 transcription factor
STRINGGRMZM2G129311_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5