PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G130149_P04
Common Namepco132275a
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 245aa    MW: 28095.8 Da    PI: 8.5764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G130149_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171060148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                       +g+WT++Ed++lv+ v+++G ++W+ Ia+  g   ++Rt+k+c++rw +yl
  GRMZM2G130149_P04 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGlrgLNRTGKSCRLRWVNYL 60
                       79***********************************************97 PP
2Myb_DNA-binding54.72.3e-1766111148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  GRMZM2G130149_P04  66 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 111
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.608560IPR017930Myb domain
SuperFamilySSF466891.94E-299107IPR009057Homeodomain-like
SMARTSM007174.9E-15962IPR001005SANT/Myb domain
PfamPF002495.2E-161060IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-191167IPR009057Homeodomain-like
CDDcd001672.98E-111260No hitNo description
PROSITE profilePS5129425.55261115IPR017930Myb domain
SMARTSM007172.2E-1665113IPR001005SANT/Myb domain
PfamPF002494.5E-1566110IPR001005SANT/Myb domain
CDDcd001675.33E-1268111No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2468114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLRGLNRTGK SCRLRWVNYL  60
HPGLKRGRMS PHEERLILEL HARWGNRWSR IARRLPGRTD NEIKNYWRTH MRKKAQERKR  120
NMSPSSSSSS LTYQSGYPDT PSTIGVEGQE LHGGSGCITS ILKGTPPDMD GYPMDQIWME  180
IEAPQMPSEE SFVGGNHNVC SSLATPLPPP TVWEYYPDAC WKVDDEIKMA TQFQFGYSEG  240
VGPCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2871151105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-28101154105C-Myb DNA-Binding Domain
1msf_C7e-28101154105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.126960.0aerial organ| ear| embryo| endosperm| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G130149
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G130149_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872860.0BT087286.1 Zea mays full-length cDNA clone ZM_BFb0029N14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664593.11e-174uncharacterized protein LOC100194394 isoform X1
SwissprotQ4JL761e-124MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A317YJF81e-173A0A317YJF8_MAIZE; Myb-related protein MYBAS2
TrEMBLC4J8Y91e-173C4J8Y9_MAIZE; MYB transcription factor
STRINGGRMZM2G130149_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-74myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]