PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G130149_P05
Common Namepco132275a
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 177aa    MW: 20056.5 Da    PI: 6.0089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G130149_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-16243548
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  GRMZM2G130149_P05  2 SPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                       899***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001678.41E-13143No hitNo description
SMARTSM007173.8E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129423.752147IPR017930Myb domain
SuperFamilySSF466891.79E-12249IPR009057Homeodomain-like
PfamPF002494.0E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSPHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS  60
SSLTYQSGYP DTPSTIGVEG QELHGGSGCI TSILKGTPPD MDGYPMDQIW MEIEAPQMPS  120
EESFVGGNHN VCSSLATPLP PPTVWEYYPD ACWKVDDEIK MATQFQFGYS EGVGPCF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.126960.0aerial organ| ear| embryo| endosperm| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G130149
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G130149_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369260.0BT036926.1 Zea mays full-length cDNA clone ZM_BFb0147O12 mRNA, complete cds.
GenBankBT0605130.0BT060513.1 Zea mays full-length cDNA clone ZM_BFb0009E10 mRNA, complete cds.
GenBankBT0872860.0BT087286.1 Zea mays full-length cDNA clone ZM_BFb0029N14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132897.11e-132uncharacterized protein LOC100194394
RefseqXP_008664606.11e-132uncharacterized protein LOC100194394 isoform X3
SwissprotQ4JL766e-76MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLB4FII81e-130B4FII8_MAIZE; Transcription factor MYB48
STRINGGRMZM2G130149_P041e-130(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.18e-35myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]