PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131281_P01
Common NameEREB116, LOC103632960, Zm.22483
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 227aa    MW: 23914.6 Da    PI: 9.7851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131281_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-2088137255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +grW+AeIrdp     + +r++lg+f t+eeAa+a++ a+++++g
  GRMZM2G131281_P01  88 QYRGVRRRP-WGRWAAEIRDPE----KaARVWLGTFATPEEAARAYDDAARRFKG 137
                        6********.**********73....35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-3188146IPR001471AP2/ERF domain
PROSITE profilePS5103224.84388145IPR001471AP2/ERF domain
SMARTSM003802.2E-3488151IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2288146IPR016177DNA-binding domain
CDDcd000182.91E-1988145No hitNo description
PfamPF008471.1E-1389137IPR001471AP2/ERF domain
PRINTSPR003673.6E-1189100IPR001471AP2/ERF domain
PRINTSPR003673.6E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MHGQRGVVPP RRGEGPKVEA AAGNGFLGHS YSAARADYDV AVMAAALTHV VCATEPPPPR  60
GGEAAALPPG PRQGGGTTEL QAAARAHQYR GVRRRPWGRW AAEIRDPEKA ARVWLGTFAT  120
PEEAARAYDD AARRFKGAKA KLNFPTTTAT ATTTTTSLSS PHQLLRSAAE SETAGEEFPD  180
LGQYMHILQS SSDADVRAVA AGLPLMNRLP PVDGRQDHGS SSASSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2084145163ATERF1
3gcc_A4e-2084145163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.224830.0pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131281
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131281_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278390.0KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652886.11e-163ethylene-responsive transcription factor 11
TrEMBLA0A060D1Y71e-162A0A060D1Y7_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G131281_P011e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-26ERF family protein