PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131476_P02
Common NameZm.76129
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 151aa    MW: 16425.9 Da    PI: 10.6429
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131476_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.35.3e-1317462756
                       HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
                       +++++ LA++l+L+ rqV vWFqNrRa+ k
  GRMZM2G131476_P02 17 QKQKAALARQLNLSPRQVEVWFQNRRARTK 46
                       57899***********************98 PP
2HD-ZIP_I/II96.72.4e-3111802090
        HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                        ++  e+++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  GRMZM2G131476_P02 11 VHNASEQKQKAALARQLNLSPRQVEVWFQNRRARTKLKQTEVDCEILKRCCETLTEENRRLHRELQQLR-A 80
                       5777899*************************************************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.681148IPR001356Homeobox domain
SMARTSM003890.0053352IPR001356Homeobox domain
SuperFamilySSF466898.78E-121056IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-121646IPR009057Homeodomain-like
PfamPF000462.0E-101746IPR001356Homeobox domain
CDDcd000861.31E-91749No hitNo description
PROSITE patternPS0002702346IPR017970Homeobox, conserved site
PfamPF021831.8E-114881IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.8E-214891IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSFFLARVVL VHNASEQKQK AALARQLNLS PRQVEVWFQN RRARTKLKQT EVDCEILKRC  60
CETLTEENRR LHRELQQLRA LSHPHPHPAA FFMPTAAAAA LSICPSCQRL VATGASAAAA  120
TTAGADNKPK AGGPGGRAPH VFSPFTNSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14048RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.761290.0embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131476
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131476_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560290.0BT056029.2 Zea mays full-length cDNA clone ZM_BFc0149G02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307477.14e-83uncharacterized protein LOC107275244
SwissprotA2Z4C48e-53HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
TrEMBLB6TAL59e-82B6TAL5_MAIZE; HB transcription factor
STRINGGRMZM2G131476_P011e-82(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-37HD-ZIP family protein