PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131516_P01
Common NameSCR
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 140aa    MW: 15229.2 Da    PI: 5.6514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131516_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS141.31e-431132241374
               GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                        +veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF++++l  +
  GRMZM2G131516_P01   1 MVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRAASLAGS 90 
                        699****9.899****************************************************999987.********************* PP

               GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  GRMZM2G131516_P01  91 AAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 132
                        *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.2681112IPR005202Transcription factor GRAS
PfamPF035143.5E-411132IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYGEDSPE RHVVEQQLLS REIRNVLAVG  60
GPARTGDVKF GSWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGALKLGW  120
KDLCLLTASA WRPIQVPPCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-741133247379Protein SCARECROW
5b3h_D7e-741133247379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.147570.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131516
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}.
UniprotTISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Function -- GeneRIF ? help Back to Top
  1. Mutations in the Scarecrow gene result in proliferation of bundle sheath cells, abnormal differentiation of bundle sheath chloroplasts, vein disorientation, loss of minor veins and reduction of vein density.
    [PMID: 23128603]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131516_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2634570.0AF263457.1 Zea mays SCARECROW (SCR) gene, complete cds.
GenBankBT0636820.0BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168484.12e-94protein SCARECROW
RefseqXP_021317511.15e-94protein SCARECROW
SwissprotQ9FUZ72e-95SCR_MAIZE; Protein SCARECROW
TrEMBLA0A1Q0YY066e-93A0A1Q0YY06_MAIZE; Scarecrow1
TrEMBLA0A1Z5RG851e-92A0A1Z5RG85_SORBI; Uncharacterized protein
TrEMBLA0A3L6F9E15e-93A0A3L6F9E1_MAIZE; Protein SCARECROW
TrEMBLC0P5W33e-95C0P5W3_MAIZE; Uncharacterized protein
STRINGSb05g001500.15e-94(Sorghum bicolor)
STRINGGRMZM2G131516_P029e-94(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.15e-63GRAS family protein
Publications ? help Back to Top
  1. Lim J, et al.
    Molecular analysis of the SCARECROW gene in maize reveals a common basis for radial patterning in diverse meristems.
    Plant Cell, 2000. 12(8): p. 1307-18
    [PMID:10948251]
  2. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]
  3. Slewinski TL,Anderson AA,Zhang C,Turgeon R
    Scarecrow plays a role in establishing Kranz anatomy in maize leaves.
    Plant Cell Physiol., 2012. 53(12): p. 2030-7
    [PMID:23128603]