PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132185_P01
Common NameZEAMMB73_236849, Zm.20262
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 241aa    MW: 24937.4 Da    PI: 9.362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132185_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-203283156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAaka++ a+++++g+
  GRMZM2G132185_P01 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAAKAYDVAAREFRGA 83
                       68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-143282IPR001471AP2/ERF domain
CDDcd000181.39E-303290No hitNo description
SuperFamilySSF541711.44E-223391IPR016177DNA-binding domain
SMARTSM003801.2E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103224.2893390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-323390IPR001471AP2/ERF domain
PRINTSPR003675.7E-113445IPR001471AP2/ERF domain
PRINTSPR003675.7E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006341anatomyprimary shoot system
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAPRVADKSP LPLATGLKLG VGGGVGGMGL GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA KAYDVAAREF RGAKAKTNFP FPLAVAVAGG AGSPSSDSTT LESSCGGSGC  120
GVEAPVQAAM PLTPALDLDL FHRAAAVSAV TTGGMPFPFK AFPVVRPTPH QYFLYNQAAA  180
AAAAGYRMFK VASAPVTVAA VAQSDSDSSS VVDRTCSPPA VTAKKEVSFE LDLNWPPPAE  240
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-223191364ATERF1
3gcc_A5e-223191364ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.202620.0ear| meristem| ovary| pedicel| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132185
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132185_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604300.0EU960430.1 Zea mays clone 224845 ethylene-responsive transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148689.21e-174uncharacterized protein LOC100282305
TrEMBLK7W3W61e-172K7W3W6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G132185_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-23erf domain protein 9