PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132223_P01
Common NameLOC103636576, ZEAMMB73_570652
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 165aa    MW: 17835.9 Da    PI: 10.286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132223_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-192878256
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr ++ +gr+++eIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  GRMZM2G132223_P01 28 HYRGVRKRP-WGRYASEIRDpWK----KTRVWLGTFDTPLEAALAYDRAARTLRGA 78
                       7********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-312886IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222887IPR016177DNA-binding domain
PROSITE profilePS5103221.6542885IPR001471AP2/ERF domain
PfamPF008472.7E-122877IPR001471AP2/ERF domain
SMARTSM003801.0E-332891IPR001471AP2/ERF domain
CDDcd000182.03E-282987No hitNo description
PRINTSPR003675.6E-102940IPR001471AP2/ERF domain
PRINTSPR003675.6E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDPTPRAVLS HSSSGGAKGG GGGGSHAHYR GVRKRPWGRY ASEIRDPWKK TRVWLGTFDT  60
PLEAALAYDR AARTLRGAKA RTNFPDDHAG QGQLQQQHLR RRQHPPPQHV SFGGVGVDCA  120
SPWHFVCFQT PTTAPATETP STALELGTGR RCGGLPFDLN EAPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212885563ATERF1
3gcc_A4e-212885563ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132223
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132223_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282612e-92KJ728261.1 Zea mays clone pUT6538 AP2-EREBP transcription factor (EREB158) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657150.11e-119ethylene-responsive transcription factor 3
TrEMBLA0A3L6DNY81e-117A0A3L6DNY8_MAIZE; Ethylene-responsive transcription factor 12
TrEMBLK7V4731e-117K7V473_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G132223_P011e-118(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-31ERF domain protein 12