PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132667_P01
Common NameLOC103642526
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 193aa    MW: 20600.2 Da    PI: 7.1366
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132667_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.71.7e-37191191101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cvlapyfpa+qp+++a vh +FG+snv+++l++lp +er +a+++++ eA++r++dPvyG++g+i++lqq+++ ++ 
  GRMZM2G132667_P01  19 RCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSLPVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQR 110
                        6******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        +la+++++l
  GRMZM2G132667_P01 111 QLATTRAQL 119
                        ****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.91518119IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-3819116IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0009025anatomyvascular leaf
PO:0001052developmental stagevascular leaf expansion stage
PO:0007065developmental stageLP.05 five leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEMDQHPDSG GGSAAASRRC AACKYLRRRC APGCVLAPYF PASQPRRYAD VHAVFGTSNV  60
TRVLQSLPVQ ERGRAADTMA TEAHCRVQDP VYGCTGIIHR LQQEIRDVQR QLATTRAQLA  120
TMHVHGGTAP PPPPPLAAAG AGAAAATVAV SSGGRRRVSV HDDDEEEAPL TVDPAEFLDL  180
DAWPPLTSEL CRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-352011912111LOB family transfactor Ramosa2.1
5ly0_B7e-352011912111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132667
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132667_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664008.21e-138LOB domain-containing protein 24
SwissprotP594682e-37LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1D6KJL11e-137A0A1D6KJL1_MAIZE; LOB domain-containing protein 23
STRINGGRMZM2G132667_P011e-138(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-35LOB domain-containing protein 24