PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G132971_P02

Common Name

LOC100281501

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

HSF

Protein Properties

Length: 117aa MW: 13244 Da PI: 8.5123

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G132971_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	78.7	9.7e-25	40	98	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d++++ ++sws+ +nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+Y GRMZM2G132971_P02 40 FLTKTYDMVDDPTTNAVVSWSAANNSFVVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTY 98 9******************999********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-26	34	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-25	36	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.67E-23	38	98	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.8E-15	40	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.3E-21	40	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-15	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.8E-15	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSHGNGMLNS VKVERWPAAV AANGQPRPMD VLHDGSSPPF LTKTYDMVDD PTTNAVVSWS 60 AANNSFVVWD PHIFGTVLLP RYFKHNNFSS FVRQLNTYVA VLPCLFLRLW NHARRDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-18	38	98	27	87	Heat shock factor protein 1
5d5v_B	5e-18	38	98	27	87	Heat shock factor protein 1
5d5v_D	5e-18	38	98	27	87	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.82658	1e-166	aerial organ\| ear\| embryo\| leaf\| meristem\| ovary\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G132971

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269\|PubMed:18064488}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G132971_P02

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041877	1e-164	BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBank	BT088410	1e-164	BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBank	EU956923	1e-164	EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBank	JX428494	1e-164	JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001147891.1	6e-67	uncharacterized protein LOC100281501
Swissprot	Q6F388	3e-47	HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBL	B4FXN9	1e-65	B4FXN9_MAIZE; Heat shock factor protein HSF30
TrEMBL	K0DCQ1	1e-65	K0DCQ1_MAIZE; HSF11 transcription factor (Fragment)
STRING	GRMZM2G132971_P01	2e-66	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-36	heat shock transcription factor A6B

Link Out ? help Back to Top
Phytozome	GRMZM2G132971_P02

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]