PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133168_P01
Common NameLOC103649611, Zm.134152
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 201aa    MW: 22193 Da    PI: 12.1431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133168_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-135492345
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a
  GRMZM2G133168_P01 54 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPRPEMAARA 92
                       9****998.**********843...6***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-145399IPR001471AP2/ERF domain
PROSITE profilePS5103216.2525392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-205392IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-135393IPR016177DNA-binding domain
PRINTSPR003672.3E-95465IPR001471AP2/ERF domain
CDDcd000181.96E-165492No hitNo description
PRINTSPR003672.3E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDMAMSQHSS DTSSTSSYSS DPSSTSSTSP RAAAGTSNGK KRPHDGAAAA APAYRGVRMR  60
AWGKWVSEIR EPRKKSRIWL GTFPRPEMAA RAPCSTSRPS RATSRARPPW RRATSRPPPR  120
APPSCTSQSL NDLMSPDGSP WRRWPWPPSW CSTTWRLCGW RTWWSWARAR PSIARGRRAM  180
GSTPPPPVST LSLSCGTTSC Y
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133168
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133168_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548780.0EU954878.1 Zea mays clone 1489920 mRNA sequence.
GenBankEU9550300.0EU955030.1 Zea mays clone 1502552 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6MHA81e-129A0A1D6MHA8_MAIZE; Uncharacterized protein
STRINGGRMZM2G133168_P021e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-20ERF family protein