PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133262_P02
Common NameZm.90876
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARR-B
Protein Properties Length: 218aa    MW: 24293.9 Da    PI: 7.1653
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133262_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.91.3e-09185208225
            G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                        +r+ Wt eLHe+F+eave LGG++
  GRMZM2G133262_P02 185 NRVTWTIELHEKFLEAVEALGGNK 208
                        79********************86 PP
2Response_reg29.44.1e-1181192105
                        EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.....HHHHESEEEEESSCTTS.....EHHHHHHHHHHHTTTSEEEEEESTTTH CS
       Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealell.....kekdpDlillDiempgm.....dGlellkeireeepklpiivvtahgee 83 
                        l+ d +p+ ++ + + l k ++ +v +++++e+al+ +     k+ d Dl+l+ +++ +m        +l+ +i +e  ++p  ++ ++++e
  GRMZM2G133262_P02   8 LVLDGDPASLSTISETLAKFNF-RVVSFQTAEAALDFIkcgaaKAADLDLVLVEVNLNNMapgtsANPDLFHHILNE-LQVPLTAMCSRDDE 97 
                        77899*****************.***************666656666**********99764444455666676543.58************ PP

                        HHHHHHHHTTESEEEESS--HH CS
       Response_reg  84 edalealkaGakdflsKpfdpe 105
                        e + +++++Ga  +l Kp +++
  GRMZM2G133262_P02  98 EALSKCMNLGACFHLLKPLNRR 119
                        ******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.1E-152147No hitNo description
SuperFamilySSF521722.42E-142136IPR011006CheY-like superfamily
PROSITE profilePS5011020.6666129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.49E-98129No hitNo description
PfamPF000721.8E-78119IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.601.5E-7182210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMERLSALVL DGDPASLSTI SETLAKFNFR VVSFQTAEAA LDFIKCGAAK AADLDLVLVE  60
VNLNNMAPGT SANPDLFHHI LNELQVPLTA MCSRDDEEAL SKCMNLGACF HLLKPLNRRS  120
FSILWHQALE HKSKKAAPQR PSLNDSTKNR MVSPSTEKPK EVLILERNNL SVPQSNGYEE  180
PKKQNRVTWT IELHEKFLEA VEALGGNKCK YSSYLHMA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133262
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133262_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645056.11e-147uncharacterized protein LOC103626423 isoform X2
RefseqXP_023155895.11e-147uncharacterized protein LOC103626423 isoform X1
TrEMBLA0A1D6GVS01e-146A0A1D6GVS0_MAIZE; Uncharacterized protein
TrEMBLA0A1D6GVS21e-146A0A1D6GVS2_MAIZE; Uncharacterized protein
TrEMBLA0A3L6ESR61e-146A0A3L6ESR6_MAIZE; Two-component response regulator ORR26
STRINGGRMZM2G133262_P011e-147(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.13e-11response regulator 20