PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G134073_P01
Common NameLOC100284907, ZEAMMB73_009442
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 259aa    MW: 27215.6 Da    PI: 8.4232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G134073_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.54.7e-31221601128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.......kvkaeek.ewyfFskrdkkya.tgkrknratksg 81 
                        lp GfrF+Ptdeel+ +yL++k+ + +l++  vi+++d+ +++P+dL  p+       +++   + e +fF++ +++   +g  + ra+ +g
  GRMZM2G134073_P01  22 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GVIPDADLARLDPSDLllPAaappaggAADDA-SgEHFFFHRPATRCWrRGGGAARAAGAG 111
                        699***************************.99**************4433677766433223.34778887776665527999******** PP

                NAM  82 yWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                        +W+ +gk++ v+s   ++ vg+k+tLvf  + r   g +tdWvmheyrl
  GRMZM2G134073_P01 112 VWRPSGKETVVVSPrCKRPVGTKRTLVFCpRRRGGGGARTDWVMHEYRL 160
                        ********99999867889**********666888999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-4015199IPR003441NAC domain
PROSITE profilePS5100540.12222200IPR003441NAC domain
PfamPF023651.8E-2023160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEARPGAWRL QQRGPGAPVA GLPIGFRFRP TDEELLLHYL RRKALACPLP AGVIPDADLA  60
RLDPSDLLLP AAAPPAGGAA DDASGEHFFF HRPATRCWRR GGGAARAAGA GVWRPSGKET  120
VVVSPRCKRP VGTKRTLVFC PRRRGGGGAR TDWVMHEYRL LPAGLHLHGC AANAPPPTNV  180
SSHGGGAAAA DWVVCRIFRR ARPAHRARLG DAQEEEEEHA AVESASSTSS CVTDASGTIG  240
QDDDGDEGIS GSCSVASSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-24102066171NO APICAL MERISTEM PROTEIN
1ut4_B3e-24102066171NO APICAL MERISTEM PROTEIN
1ut7_A3e-24102066171NO APICAL MERISTEM PROTEIN
1ut7_B3e-24102066171NO APICAL MERISTEM PROTEIN
3swm_A3e-24102069174NAC domain-containing protein 19
3swm_B3e-24102069174NAC domain-containing protein 19
3swm_C3e-24102069174NAC domain-containing protein 19
3swm_D3e-24102069174NAC domain-containing protein 19
3swp_A3e-24102069174NAC domain-containing protein 19
3swp_B3e-24102069174NAC domain-containing protein 19
3swp_C3e-24102069174NAC domain-containing protein 19
3swp_D3e-24102069174NAC domain-containing protein 19
4dul_A3e-24102066171NAC domain-containing protein 19
4dul_B3e-24102066171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.954530.0endosperm| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G134073
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G134073_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686350.0BT068635.1 Zea mays full-length cDNA clone ZM_BFb0353I15 mRNA, complete cds.
GenBankEU9700760.0EU970076.1 Zea mays clone 339455 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151274.10.0uncharacterized protein LOC100284907
TrEMBLB6TYL10.0B6TYL1_MAIZE; NAC domain containing protein 84
STRINGGRMZM2G134073_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Representative plantOGRP1730523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-22NAC domain containing protein 25
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]