PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G134260_P02
Common NameZEAMMB73_102722, Zm.131754
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 177aa    MW: 19529.4 Da    PI: 10.7005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G134260_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.34.8e-1222502856
                       HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +LA++lgL  rqV vWFqNrRa+ k
  GRMZM2G134260_P02 22 KQKVQLANRLGLRPRQVEVWFQNRRARTK 50
                       7899***********************98 PP
2HD-ZIP_I/II93.42.4e-3017862292
        HD-ZIP_I/II 22 ekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                       +++ +++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l++en+rLeke ++Lr +lk
  GRMZM2G134260_P02 17 SRVLQKQKVQLANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCDRLADENKRLEKELADLR-ALK 86
                       566689************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0017356IPR001356Homeobox domain
CDDcd000862.63E-81153No hitNo description
SuperFamilySSF466891.41E-101261IPR009057Homeodomain-like
PfamPF000461.7E-92150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-112155IPR009057Homeodomain-like
PROSITE profilePS5007112.4062252IPR001356Homeobox domain
PRINTSPR000315.9E-62332IPR000047Helix-turn-helix motif
PROSITE patternPS0002702750IPR017970Homeobox, conserved site
PRINTSPR000315.9E-63248IPR000047Helix-turn-helix motif
SMARTSM003404.2E-205295IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-105286IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0008019anatomyleaf lamina base
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001051developmental stagevascular leaf initiation stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
PO:0025574developmental stagevascular leaf differentiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRSCPGGVSD NFFVVWSRVL QKQKVQLANR LGLRPRQVEV WFQNRRARTK LKQTEVDCEY  60
LKRWCDRLAD ENKRLEKELA DLRALKAAPP SSAAAQPASA AATLTMCPSC RRVAAAASHH  120
HQPPPPQCHP KPTVAAGGGS VVPRPSHCQF FPAAAVDRTS QGTWNTAAPP LVTRELF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.215731e-62cell culture| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G134260
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G134260_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932886e-83FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659311.12e-83homeobox-leucine zipper protein HOX2
SwissprotQ5VPE31e-64HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U861e-64HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A3L6D9308e-83A0A3L6D930_MAIZE; Homeobox-leucine zipper protein HOX2
STRINGGRMZM2G134260_P019e-83(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-33homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]