PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G134735_P01
Common NamebHLH135
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 251aa    MW: 26913.3 Da    PI: 9.1989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G134735_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08174214954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  GRMZM2G134735_P01 174 ARVRRERISERIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 214
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.231165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-13170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-13171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5175214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-6187219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDLDMLNSHP EAQLELMNAM LQLEQLAGFP LHDHGGAIMM AVPSTPPSPP PPPGMQQQAA  60
THHHHLSSVP RHMSAGATAN NNGRAGVYDD HQYPRQVRVT AASSSSCSCN DGGSSGEISA  120
TAAAAVGSSS SSSAMREMVF RVAALQPVNI EPEMVRPPKR RNARISTDPQ SVAARVRRER  180
ISERIRVLQR LVPGGTKMDT ASMLDEAIHY VKFLKTQVQS LERAAAADAR RPVPDNGGAA  240
PYSSARINGQ W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RPPKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G134735
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G134735_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269900.0KJ726990.1 Zea mays clone pUT3962 bHLH transcription factor (bHLH135) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664512.10.0transcription factor HEC2
SwissprotQ9SND44e-39HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A060CVJ80.0A0A060CVJ8_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G134735_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]