PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G135018_P01
Common NameLOC103646272
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29348.7 Da    PI: 9.3384
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G135018_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.7e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRr g++KKA+EL +LCda++ viifs +g++yeyss
  GRMZM2G135018_P01  9 KKIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box471.1e-16851611490
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                        +++  qe++++k+e + L+    +++ edL s s ++L +Leqq+e sl k+R +K+ell +q+ e +++e  +  e
  GRMZM2G135018_P01  85 QQKIVQEMTRMKDERNRLRMIMAQYMAEDLASFSAQDLSNLEQQIEFSLYKVRLRKQELLDQQLLEIRQREMHMPAE 161
                        68999******************************************************************987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-30279IPR002100Transcription factor, MADS-box
CDDcd002652.76E-39276No hitNo description
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1481162IPR002487Transcription factor, K-box
PROSITE profilePS5129711.03185186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN RLRMIMAQYM AEDLASFSAQ  120
DLSNLEQQIE FSLYKVRLRK QELLDQQLLE IRQREMHMPA EQSGYLCLMN PAAAIASGQH  180
QQAGEMVGIN PRPFPWWDVG ASGSGSQSQQ LLLHGRDAAE SSMTALGLSP QMHGYRLQPR  240
QPNLQQDADI HRWLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16160160MEF2 CHIMERA
6byy_B1e-16160160MEF2 CHIMERA
6byy_C1e-16160160MEF2 CHIMERA
6byy_D1e-16160160MEF2 CHIMERA
6bz1_A1e-16160160MEF2 CHIMERA
6bz1_B1e-16160160MEF2 CHIMERA
6bz1_C1e-16160160MEF2 CHIMERA
6bz1_D1e-16160160MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G135018
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G135018_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385320.0BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691330.0BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020403834.10.0MADS-box transcription factor 31
SwissprotQ84NC22e-88MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A1D6HRZ70.0A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16
STRINGGRMZM2G135018_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]