PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G135461_P01

Common Name

ZEAMMB73_045179

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

TCP

Protein Properties

Length: 132aa MW: 15089.2 Da PI: 7.592

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G135461_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	58.6	2.6e-18	1	57	22	70
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssa 70 +Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++ +++s+ GRMZM2G135461_P01 1 MRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAaeqilgvgKTTSQ 57 8****************************************9995555544422222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.403	1	41	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.3E-16	1	75	IPR005333	Transcription factor, TCP
SMART	SM00271	3.1E-10	43	100	IPR001623	DnaJ domain
PROSITE profile	PS50076	12.735	44	111	IPR001623	DnaJ domain
PRINTS	PR00625	1.2E-9	46	64	IPR001623	DnaJ domain
Pfam	PF00226	1.2E-12	47	85	IPR001623	DnaJ domain
SuperFamily	SSF46565	1.05E-13	47	83	IPR001623	DnaJ domain
Gene3D	G3DSA:1.10.287.110	1.4E-14	47	88	IPR001623	DnaJ domain
CDD	cd06257	2.11E-12	47	80	IPR001623	DnaJ domain
PRINTS	PR00625	1.2E-9	64	79	IPR001623	DnaJ domain

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MRLSVGVARE FLALQDRLGF DKASKTLNWL LAQSKPPIDC LVDAAEQILG VGKTTSQQEI 60 KKAYHKLALR LHPDKNPGDE VTEADIEEFE AKYRGSDYEK TDLKDLYTKY KGNMNRNNYL 120 LYHIVKSETV LL

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G135461

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G135461_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU960947	1e-77	EU960947.1 Zea mays clone 229801 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025604433.1	1e-27	chaperone protein dnaJ 6 isoform X2
TrEMBL	A0A1D6KDY4	8e-61	A0A1D6KDY4_MAIZE; Chaperone protein dnaJ 6
STRING	GRMZM2G135461_P01	1e-93	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.1	7e-13	TCP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G135461_P01