PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137289_P01
Common NameLOC103652179
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15086.2 Da    PI: 10.9448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137289_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.1e-11932124
                       S---SHHHHHHHHHHHHHHHHHHH CS
             SRF-TF  1 krienksnrqvtfskRrngilKKA 24
                       k+ien +nrqvtfskRr g++K A
  GRMZM2G137289_P01  9 KKIENPTNRQVTFSKRRMGLFKQA 32
                       68********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-4141IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-11132IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.633142IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-91032IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-102338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGRGKVEPKK IENPTNRQVT FSKRRMGLFK QAIRRRCTCQ PEQGGYLCLM NLAAAIASGQ  60
HQQAGEMVGI NPRLFLWWDV GASGSGSQSQ QLLHGRDAAE SSMTTLGLSP QMHRYRLQPR  120
QPNLRQDADV HGGLW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120011e-105meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137289
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137289_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385321e-102BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691331e-102BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
GenBankEU9625141e-102EU962514.1 Zea mays clone 243332 mRNA sequence.
GenBankEU9691841e-102EU969184.1 Zea mays clone 326672 MADS-box transcription factor 31 mRNA, complete cds.
GenBankHQ8587371e-102HQ858737.1 Zea mays clone UT1435 MADS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676039.13e-97uncharacterized protein LOC103652179
TrEMBLA0A1D6MX116e-96A0A1D6MX11_MAIZE; Uncharacterized protein
STRINGGRMZM2G137289_P011e-96(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.45e-12MIKC_MADS family protein