PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137426_P01
Common NameZm.129809
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 288aa    MW: 29791.7 Da    PI: 9.7217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137426_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-06261284629
                        HHHHHHHHHHHHHHHHHHHCTSCC CS
                HLH   6 nerErrRRdriNsafeeLrellPk 29 
                        +++Er RR ri +++ +L++l+P+
  GRMZM2G137426_P01 261 SIAERERRTRISEKLRKLQDLVPN 284
                        689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.724255288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.04E-5258286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.98E-4259287No hitNo description
Gene3DG3DSA:4.10.280.104.0E-5260286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MRRFLPAGGG GGGGEPSSSS SSGGHQHHQH GGLASGERAA AGLRYRGGAD ISLGHGHDDG  60
GHGRSIDAAD RRNDGSMDML ARHSSSPVGF FSNLVVDNGY PRSNKAGGGG GVEGQQHDPS  120
TAANASGSSA RKMKTPEFNF TGAQQGQQLG AAAGHLSRIS EDGAFPGGMM GDRAGRGSAG  180
ESSGAAAAAR SYSAGGFSIV GPWEESRDII TTLGAYDPQF SGAMAGTALE MAGMDRYVQL  240
QQDQVPFKVR AKRGCATHPR SIAERERRTR ISEKLRKLQD LVPNMDKV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137426
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137426_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547250.0EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645902.10.0transcription factor bHLH128
RefseqXP_008645903.10.0transcription factor bHLH128
TrEMBLA0A1D6HCJ00.0A0A1D6HCJ0_MAIZE; Transcription factor bHLH128
STRINGGRMZM2G137426_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-25bHLH family protein