PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137510_P01
Common NameLOC100285996, ZEAMMB73_384384
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27529.2 Da    PI: 8.8344
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137510_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.32.2e-241260250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       rien+  rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++
  GRMZM2G137510_P01 12 RIENSVSRQVTFSKRRRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 60
                       8**********************************************97 PP
2K-box74.82.3e-2588176997
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          e+ + +++ ++ kL++++e ++++qR+l+Ge+LesL+++e qqLe++++++l+++Rs+K+++ll++i+el++ke  l e+n  L+k+
  GRMZM2G137510_P01  88 YPEESQGNMSYDHIKLRSKLEAIKKSQRNLMGEQLESLTFREVQQLEHRIDSALRNVRSRKDHILLNSIQELRNKETFLMEQNGILEKE 176
                        55677899***************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.787363IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-31362IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-28482IPR002100Transcription factor, MADS-box
CDDcd002651.52E-35475No hitNo description
PRINTSPR004041.9E-26525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PfamPF003198.5E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-262540IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-264061IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2291176IPR002487Transcription factor, K-box
PROSITE profilePS5129713.99493183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRGKVEV RRIENSVSRQ VTFSKRRRGL AKKARELAVL CDADVALLVF SDKGRLHDFA  60
AHGSMERILG RYERYLLCED RDDVTQDYPE ESQGNMSYDH IKLRSKLEAI KKSQRNLMGE  120
QLESLTFREV QQLEHRIDSA LRNVRSRKDH ILLNSIQELR NKETFLMEQN GILEKEKAAV  180
GASSSLHTTT STAAASSTAA AAAALPNLNI CPDDSDEPGM AAAAGIRLPW WMLQPSAVSQ  240
RQEQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-16475272Myocyte-specific enhancer factor 2B
1tqe_Q2e-16475272Myocyte-specific enhancer factor 2B
1tqe_R2e-16475272Myocyte-specific enhancer factor 2B
1tqe_S2e-16475272Myocyte-specific enhancer factor 2B
6c9l_A2e-16475272Myocyte-specific enhancer factor 2B
6c9l_B2e-16475272Myocyte-specific enhancer factor 2B
6c9l_C2e-16475272Myocyte-specific enhancer factor 2B
6c9l_D2e-16475272Myocyte-specific enhancer factor 2B
6c9l_E2e-16475272Myocyte-specific enhancer factor 2B
6c9l_F2e-16475272Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.267280.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137510
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137510_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750670.0EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152356.10.0uncharacterized protein LOC100285996
SwissprotQ2QQA38e-77MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLB6UCV21e-180B6UCV2_MAIZE; MADS-box transcription factor 14
STRINGGRMZM2G137510_P031e-101(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-43AGAMOUS-like 8