PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137736_P01
Common NameLOC100275992, ZEAMMB73_918275
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 227aa    MW: 23953.1 Da    PI: 8.7166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137736_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-0585107123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++C + F++   L  H+++H
  GRMZM2G137736_P01  85 YTCGYCRREFRSAQALGGHMNVH 107
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-684112No hitNo description
PROSITE profilePS5015711.07485112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIHLDTKCYY LASLAQLLAT YRTTPPATRT PAMESSRDHG RGLKPLPAWT TTTTPAGTGH  60
SFSLAAGCFP WPPQRSSPPP SVSCYTCGYC RREFRSAQAL GGHMNVHRRD RARLRQCCSA  120
SAAAHPSASL PSPALTARHQ HSRAPIPNLN FSPQHCAAGG SMAAADPVIY SLFSTTTSSS  180
TAVATKAAVE VSLELGIGVC GRSSGRGGGV VEDDGLDLEL RLGCAWE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137736
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137736_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591930.0EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143365.21e-165uncharacterized protein LOC100275992
TrEMBLA0A1D6J4G91e-139A0A1D6J4G9_MAIZE; Transcriptional regulator SUPERMAN
TrEMBLA0A3L6G5K81e-139A0A3L6G5K8_MAIZE; Zinc finger protein 10
STRINGGRMZM2G137736_P011e-164(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.17e-15zinc finger protein 11