PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G137802_P01

Common Name

LOC100281947, ZEAMMB73_031547

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

WRKY

Protein Properties

Length: 191aa MW: 20098.1 Da PI: 8.9804

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G137802_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.8e-31	104	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp +v++tYeg+Hnh GRMZM2G137802_P01 104 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPGYVVTTYEGTHNHA 162 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.4E-34	90	164	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-28	96	164	IPR003657	WRKY domain
PROSITE profile	PS50811	31.812	99	164	IPR003657	WRKY domain
SMART	SM00774	9.2E-36	104	163	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	105	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MAAVGARPVL YHHHPHPAPA GGAPAPMSSS YFSRGGGSSS PASSLSAAHL DISEFLFDDA 60 SVVVPPDASG GGAISAGGAG SAAAPERPRT DRIAFRTRSE VEVLDDGYKW RKYGKKSVKN 120 SPNPRNYYRC STEGCNVKKR VERDRDDPGY VVTTYEGTHN HASPSTVYYA SQDAASGRFF 180 VAGTQPPGPG L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	95	165	8	78	Probable WRKY transcription factor 4
2lex_A	4e-26	95	165	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G137802

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G137802_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU958732	0.0	EU958732.1 Zea mays clone 1711977 WRKY7 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008654941.1	1e-136	WRKY7 - superfamily of TFs having WRKY and zinc finger domains isoform X1
Swissprot	Q8VWQ5	1e-40	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A1D6FWS3	1e-134	A0A1D6FWS3_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRING	GRMZM2G137802_P01	1e-136	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-41	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	GRMZM2G137802_P01

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]