PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G138967_P01
Common NameLOC100284189, ZEAMMB73_415160
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 195aa    MW: 21239 Da    PI: 10.3093
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G138967_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.81.9e-202963135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+nC+ttkT+lWR gp+g+k+LCnaCG++yrk+++
  GRMZM2G138967_P01 29 CANCHTTKTSLWRGGPEGPKSLCNACGIRYRKRRQ 63
                       ********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-172379IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.022359IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.5E-162564IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-142666No hitNo description
CDDcd002028.79E-152868No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003203.7E-182963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGMEIDMETY PNLNTSPSAA TASGDAKACA NCHTTKTSLW RGGPEGPKSL CNACGIRYRK  60
RRQAIGLDAG AAAAANSQQD LQQPKKKAAV DPQQQDQHQL RKKTTAVANP QQDRHQPRKR  120
AAAAAAATDP QHTSITKKDT DKKDQQVTVD LHVVGFGKEA TFKQRRRMRH NKCMSEEERA  180
AVLLMALSSG VIYAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.264450.0ear| embryo| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G138967
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G138967_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674440.0EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150557.11e-144uncharacterized protein LOC100284189
TrEMBLA0A3L6DMR51e-143A0A3L6DMR5_MAIZE; GATA transcription factor 15
TrEMBLB6TR291e-143B6TR29_MAIZE; GATA zinc finger family protein
STRINGGRMZM2G138967_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-16GATA transcription factor 15
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]