PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139963_P01
Common NameHB102, Zm.83544
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 344aa    MW: 37604.1 Da    PI: 6.7673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139963_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.5e-18120173356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  GRMZM2G139963_P01 120 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 173
                        4568999**********************************************9 PP
2HD-ZIP_I/II1284e-41119209191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++e+
  GRMZM2G139963_P01 119 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALLSHNKKLQAEI 209
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-19111177IPR009057Homeodomain-like
PROSITE profilePS5007117.086115175IPR001356Homeobox domain
SMARTSM003891.3E-17118179IPR001356Homeobox domain
PfamPF000463.4E-15120173IPR001356Homeobox domain
CDDcd000862.49E-17120176No hitNo description
Gene3DG3DSA:1.10.10.602.7E-18122183IPR009057Homeodomain-like
PRINTSPR000311.7E-5146155IPR000047Helix-turn-helix motif
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5155171IPR000047Helix-turn-helix motif
PfamPF021833.1E-14175215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRPMASNGMA SAPSPFFPPN FLLQMQQTPS DHEHQEQHHH HHHHKHHLAA PPLHPHHNPF  60
LPSSQCPSLQ DFRGMAPIML GKRPMYGADV QVVGGEEVNG CGGVNEDELS DDGSQAGGEK  120
KRRLNVEQVR TLEKNFELGN KLEPERKLQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD  180
YDALKRQLDA VKADNDALLS HNKKLQAEIL SLKGREAGGS SELINLNKET EASCSNRSEN  240
SSEINLDISR APASEAPLDP TPPPGAGGGG MIPFYPPSVG GRPASAAGVD IDQLLHTSAP  300
KLEQHGSGGA VVVQAAETAS FGNLLCGVDE PPPFWPWADH QHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.835440.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139963
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139963_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664900.0EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353536.10.0homeobox-leucine zipper protein HAT7
SwissprotQ8S7W91e-141HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A060D3B50.0A0A060D3B5_MAIZE; HB transcription factor (Fragment)
STRINGGRMZM2G139963_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-80HD-ZIP family protein