PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G140901_P02
Common NameZEAMMB73_610227, Zm.84421
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 74aa    MW: 8356.49 Da    PI: 4.4318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G140901_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.57.8e-171060150
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkk 50
                       lppGfrF P+deelv++yL+ kv++++l  + + + evd++++ePw+Lp +
  GRMZM2G140901_P02 10 LPPGFRFYPSDEELVCHYLHGKVANEQLAGAGAaMVEVDLHTHEPWELPGT 60
                       79*************************8776666**************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-17761IPR003441NAC domain
PROSITE profilePS5100518.9481074IPR003441NAC domain
PfamPF023651.8E-81161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009001anatomyfruit
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANEQLAGA GAAMVEVDLH THEPWELPGT  60
YSYSVPWQLI QLFA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.844213e-95endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G140901
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G140901_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0849787e-93BT084978.2 Zea mays full-length cDNA clone ZM_BFb0218P20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679189.11e-34NAC domain-containing protein 79
SwissprotQ9FLR33e-14NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A3L6F8U33e-33A0A3L6F8U3_MAIZE; NAC domain-containing protein 79
TrEMBLK7UK163e-33K7UK16_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G140901_P016e-34(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.29e-19NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]