PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141299_P03
Common NameZm.17359
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 200aa    MW: 22007.3 Da    PI: 4.2912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141299_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY491.2e-152412159
                       -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                        r+YYrC+s+ gCp++k+vers+ dp+++ +tY+ eHnhe
  GRMZM2G141299_P03  2 CRGYYRCSSSkGCPARKQVERSHADPTALLVTYTFEHNHE 41
                       69******998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.589143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-15243IPR003657WRKY domain
SuperFamilySSF1182901.22E-12243IPR003657WRKY domain
SMARTSM007742.5E-8342IPR003657WRKY domain
PfamPF031062.7E-13341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MCRGYYRCSS SKGCPARKQV ERSHADPTAL LVTYTFEHNH EAPQPKTSGG SCCHQQGKPS  60
ARPPAPKPEP SVVLVQRDEL GPEHELVETE VPEQEQETEP EEEHEPAEEG VPCLAGPEAA  120
ATLTVAPAAE EDESFDFGWF DQYPTWHRSA LYAPLLPPEE WERELQGEDA LFAGLGELPE  180
CAVVFGRRRE LSLAATAPCS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141299
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141299_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9537030.0EU953703.1 Zea mays clone 1444502 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675050.11e-140probable WRKY transcription factor 65
TrEMBLA0A060D2Q81e-138A0A060D2Q8_MAIZE; Putative WRKY transcription factor 69 (Fragment)
TrEMBLA0A3L6FJ171e-138A0A3L6FJ17_MAIZE; Putative WRKY transcription factor 65
STRINGGRMZM2G141299_P011e-139(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-17WRKY DNA-binding protein 65