PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141955_P03
Common Namepco127567(465), YAB11
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 207aa    MW: 23073.2 Da    PI: 9.0656
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141955_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.58.4e-7171775170
              YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                          +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ ++ +++l+++   +++ +l+ +++    ++ +  s+s+s+
  GRMZM2G141955_P03   7 APADHVCYVHCNFCNTVLAVSVPGNSMLSMVTVRCGHCTNLLSVNLRALMHSVPEQDQLQQENI-RVHGTLREHHQCGGGHHLELGSSSSSR 97 
                        5689******************************************************987654.466677766666555554444433333 PP

              YABBY  97 .ssekl....senedeevprvppvirP.PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +  ++    ++ne+    ++ +  rP PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  GRMZM2G141955_P03  98 fRLPMMmsyaPQNEHLLQEQTLNNARPaPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177
                        0222223443222222223333456766**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-718177IPR006780YABBY protein
SuperFamilySSF470954.84E-8121171IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.5E-5126171IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSSAQIAPAD HVCYVHCNFC NTVLAVSVPG NSMLSMVTVR CGHCTNLLSV NLRALMHSVP  60
EQDQLQQENI RVHGTLREHH QCGGGHHLEL GSSSSSRFRL PMMMSYAPQN EHLLQEQTLN  120
NARPAPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLNSG  180
REGGKNKLVD EAVAAVAVAP KKIQGFY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1180590.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141955
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141955_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0397870.0BT039787.1 Zea mays full-length cDNA clone ZM_BFc0045D16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140845.11e-155uncharacterized protein LOC100272921
SwissprotQ2QM172e-85YAB6_ORYSJ; Protein YABBY 6
TrEMBLB4FRP91e-154B4FRP9_MAIZE; C2C2-YABBY transcription factor
STRINGGRMZM2G141955_P031e-155(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-53YABBY family protein