PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141955_P05
Common Namepco127567(465)
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 175aa    MW: 19755.4 Da    PI: 10.0454
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141955_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY173.41.4e-53214532170
              YABBY  32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv.ssekl....senedeevprvppvirP 118
                        +++vtvrCGhCt+llsvnl+  ++ ++ +++l+++   +++ +l+ +++    ++ +  s+s+s+ +  ++    ++ne+    ++ +  rP
  GRMZM2G141955_P05   2 LSMVTVRCGHCTNLLSVNLRALMHSVPEQDQLQQENI-RVHGTLREHHQCGGGHHLELGSSSSSRfRLPMMmsyaPQNEHLLQEQTLNNARP 92 
                        679****************************987654.466677766666555554444433333022222344322222222333345676 PP

              YABBY 119 .PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  GRMZM2G141955_P05  93 aPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 145
                        6**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-531145IPR006780YABBY protein
SuperFamilySSF470953.14E-889139IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.1E-594139IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLSMVTVRCG HCTNLLSVNL RALMHSVPEQ DQLQQENIRV HGTLREHHQC GGGHHLELGS  60
SSSSRFRLPM MMSYAPQNEH LLQEQTLNNA RPAPEKRQRV PSAYNRFIKE EIRRIKANNP  120
DISHREAFST AAKNWAHYPN IHFGLNSGRE GGKNKLVDEA VAAVAVAPKK IQGFY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1180590.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141955
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141955_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0397870.0BT039787.1 Zea mays full-length cDNA clone ZM_BFc0045D16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140845.11e-129uncharacterized protein LOC100272921
SwissprotQ2QM177e-63YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A1D6KGI41e-128A0A1D6KGI4_MAIZE; Putative axial regulator YABBY 2
TrEMBLB4FRP91e-128B4FRP9_MAIZE; C2C2-YABBY transcription factor
STRINGGRMZM2G141955_P031e-129(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-40YABBY family protein