PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143204_P03
Common NameLOC100191170
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 331aa    MW: 34512 Da    PI: 6.403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143204_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33138196159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  GRMZM2G143204_P03 138 LDDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHS 196
                        59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-34123196IPR003657WRKY domain
SuperFamilySSF1182906.28E-29130197IPR003657WRKY domain
PROSITE profilePS5081130.09133198IPR003657WRKY domain
SMARTSM007742.4E-39138197IPR003657WRKY domain
PfamPF031061.8E-26139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004006anatomymesophyll cell
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAGAAGDRSE EDVGADWPFG GVDAFTEYSS FFAEPGWPGG LAGELIPVLD LPEAAAPLPA  60
QLSTEPSEEP APARSGDAGA SSSSSGDGAA PGNGDGDDDR KAAPAAEAAG RKPAAKKGQK  120
RARQPRFAFM TKTELDHLDD GYRWRKYGQK AVKNSPFPRS YYRCTNSKCT VKKRVERSSD  180
DPSVVITTYE GQHCHSIGPF QRGGGGGAAA ARYHSAAAVA LAEQMYSSST TSSFIPAARQ  240
QLFSLPPLHP QSSPPSSETT PPPVVSSVTT TSFQRANDGD ELWRTGTGYG SGVSVAQSPS  300
TPPSVPPPVV SVQKAGLLDD MVPHGVRHGT P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25129197876Probable WRKY transcription factor 4
2lex_A1e-25129197876Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143204
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143204_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331950.0BT033195.1 Zea mays full-length cDNA clone ZM_BFb0063P02 mRNA, complete cds.
GenBankBT0373070.0BT037307.1 Zea mays full-length cDNA clone ZM_BFb0162B09 mRNA, complete cds.
GenBankBT0859850.0BT085985.1 Zea mays full-length cDNA clone ZM_BFc0095K05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130077.10.0uncharacterized protein LOC100191170
TrEMBLB4F7V70.0B4F7V7_MAIZE; Putative WRKY transcription factor 57
STRINGGRMZM2G143204_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-42WRKY DNA-binding protein 57