PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143718_P01
Common NameLOC100273363, Orphan191
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 206aa    MW: 22716.3 Da    PI: 5.5304
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143718_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07333434
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                       ++C+ +e+ ++ lfC  ++  lC+ C ++ H
  GRMZM2G143718_P01  3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33
                       68**************************998 PP
2zf-B_box26.99.6e-095291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       +  +C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  GRMZM2G143718_P01 52 KLVRCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                       6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000212.85E-8345No hitNo description
PfamPF006435.2E-6341IPR000315B-box-type zinc finger
SMARTSM003361.4E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.7125196IPR000315B-box-type zinc finger
PfamPF006435.5E-75291IPR000315B-box-type zinc finger
CDDcd000216.09E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE  60
NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMEIQD  120
PENQRDQKKP PKEQTANHHN GDDPATDGNC DDQGNIDSKM IDLNMRPVRT HGQESNSQTQ  180
GVGLSVNNHD SPGVVPTSNS ERDTSK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1192350.0endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143718
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143718_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409280.0BT040928.1 Zea mays full-length cDNA clone ZM_BFc0153E05 mRNA, complete cds.
GenBankEU9558390.0EU955839.1 Zea mays clone 1548279 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141274.11e-153Salt tolerance-like protein
SwissprotC0SVM54e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3L6E5611e-151A0A3L6E561_MAIZE; B-box zinc finger protein 19
TrEMBLB4FUZ01e-151B4FUZ0_MAIZE; B-box zinc finger protein 19
STRINGGRMZM2G143718_P011e-152(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-77DBB family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]