PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G145041_P02
Common NameZm.5979
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 92aa    MW: 10615 Da    PI: 7.3538
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G145041_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-085985128
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                       r +WT+eE+ ++++a k++G   W+ I 
  GRMZM2G145041_P02 59 REKWTEEEHGKFLEALKLYGRS-WRQIQ 85
                       789*****************55.*9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-74985IPR009057Homeodomain-like
PROSITE profilePS5129410.35492IPR017930Myb domain
TIGRFAMsTIGR015571.4E-75785IPR006447Myb domain, plants
PfamPF002495.4E-65984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-65986IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MESMAQERDA LDSPALSIDK RLRSDAVESP LVDDATQPKE GADGYPVKVR KPYTITKQRE  60
KWTEEEHGKF LEALKLYGRS WRQIQGACRL YM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.59791e-143ear| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G145041
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G145041_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0677651e-141BT067765.1 Zea mays full-length cDNA clone ZM_BFc0156C11 mRNA, complete cds.
GenBankEU9569781e-141EU956978.1 Zea mays clone 1579341 hypothetical protein mRNA, complete cds.
GenBankKJ7283161e-141KJ728316.1 Zea mays clone pUT6597 MYB-related transcription factor (MYBR96) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146835.12e-52uncharacterized LOC100280442
TrEMBLA0A060D2R42e-52A0A060D2R4_MAIZE; MYB-related transcription factor (Fragment)
TrEMBLB6SW632e-52B6SW63_MAIZE; Protein REVEILLE 7
STRINGGRMZM2G145041_P014e-53(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-19MYB_related family protein