PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G145568_P01
Common NameLOC103639277, ZEAMMB73_997490
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 239aa    MW: 25340.6 Da    PI: 5.6978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G145568_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.5e-41641631100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk+
  GRMZM2G145568_P01  64 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQRQANELKV 155
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++ 
  GRMZM2G145568_P01 156 QLARAQAD 163
                        ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.48263164IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-4164161IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009054anatomyinflorescence bract
PO:0020136anatomyear inflorescence
PO:0007001developmental stageearly whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDDYGNAIVV TGTAAPLKYN CRSVSPPSSV SSSCSPPPPP PPPTPPAAVQ VVVGNVAPTV  60
VLSPCAACKI LRRRCADGCV LAPYFPPTEP AKFTTAHRVF GASNIIKLLQ DLPESSRADA  120
VSSMVYEAEA RLRDPVYGCA GAVCRLQRQA NELKVQLARA QADLLSAQAQ HADLLALFCV  180
EMANRRGNRQ QQQQPSPPTT TVDGGGGSEF GGAAYGQTFY DSDDLDSATW PDHEAQLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-426316510112LOB family transfactor Ramosa2.1
5ly0_B7e-426316510112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G145568
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G145568_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539370.0EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660255.11e-175LOB domain-containing protein 1
RefseqXP_008660256.11e-175LOB domain-containing protein 1
SwissprotQ9LQR03e-62LBD1_ARATH; LOB domain-containing protein 1
TrEMBLK7VEV11e-174K7VEV1_MAIZE; Putative LOB domain-containing family protein
STRINGGRMZM2G145568_P011e-175(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-63LOB domain-containing protein 1