PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G145579_P01
Common NamebHLH165, LOC100502330, ZEAMMB73_601253
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 319aa    MW: 34067 Da    PI: 6.4242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G145579_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-10141188455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+ l+P +    +k   Ka++L + ++Y++sLq
  GRMZM2G145579_P01 141 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKAMVLDEIINYVQSLQ 188
                        8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17135204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-10135192No hitNo description
Gene3DG3DSA:4.10.280.108.2E-17137201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MADADLTPNH SLLLKMPAAS AHAHSPSLSS LLLYGQESHG EAAPANANAN AAAATVEDAA  60
SLETSSAVVD SASPMERKRK ATAEDSAAIS SPQPKDCKQE SKSRRGKRPR KETEEKSSTD  120
EDEASKGYIH VRARRGQATD SHSLAERVRR ERISERMRML QALVPGCDKV TGKAMVLDEI  180
INYVQSLQNQ VEFLSMRIAS MSPVLYGFGT NSEGLHDHHA PKMGGVSFQE AAIAVPAGPA  240
AAVSQASSRP APSEATMNTA CTTTPYSVSL QAQASISFSP SQENGGTYYL VQQAVGEQAT  300
RQEELLLSQL VFSNMCSFQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809180.0leaf| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G145579
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G145579_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0878130.0BT087813.1 Zea mays full-length cDNA clone ZM_BFb0210J01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183737.10.0uncharacterized protein LOC100502330
TrEMBLC4JAG60.0C4JAG6_MAIZE; BHLH transcription factor
STRINGGRMZM2G145579_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-36bHLH family protein