PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G146380_P01
Common NameLOC103627335, Zm.143786
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 252aa    MW: 25667.1 Da    PI: 7.1635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G146380_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.53e-11127102128
                NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                        +kktLvfy+grap+g kt Wvmheyrl
  GRMZM2G146380_P01   1 MKKTLVFYTGRAPRGGKTGWVMHEYRL 27 
                        8************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.631164IPR003441NAC domain
PfamPF023656.1E-5127IPR003441NAC domain
SuperFamilySSF1019412.88E-15164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKKTLVFYTG RAPRGGKTGW VMHEYRLQGK HAAAATSSSL VVPSSVRAGA SSKDEWVLCR  60
VFKKSIEPPS VPGSKRSSSV ACMGTEGTGV GVGPSSMSTE DDFAACAALP PLMDVSGGGA  120
NMSLSAAAAA AAASIELTPP AAPAPHVTCF SNAPLEGQFL NPPFLLPSAA AAADHIALAA  180
SASPFLASMM MQQQAQYAGD AGVVHGDGLL QGAGGWYGKL AGERERLSGG GVPAEISSTR  240
HCMDHEASFW GF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G146380
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G146380_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4284840.0JX428484.1 Zea mays subsp. mays clone pUT3081 NAC30 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394166.11e-180NAC domain-containing protein 92 isoform X2
TrEMBLK0DCP50.0K0DCP5_MAIZE; NAC30 NAC type transcription factor (Fragment)
STRINGGRMZM2G146380_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-20NAC domain containing protein 46