PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G146514_P02
Common NameLOC100273243, ZEAMMB73_909252
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 441aa    MW: 47660.6 Da    PI: 8.5091
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G146514_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38e-115578326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++ C++++rtG C++G +CkF+H+
  GRMZM2G146514_P02 55 EPDCSYYMRTGMCRFGMTCKFNHP 78
                       789********************8 PP
2zf-CCCH38.81.5e-12100124327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  GRMZM2G146514_P02 100 QPECQYYLKTGTCKFGATCKFHHPR 124
                        799********************96 PP
3zf-CCCH361.1e-11146170327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +++rtG+Ck+G++CkF+H++
  GRMZM2G146514_P02 146 EKECAYYLRTGQCKFGSTCKFHHSQ 170
                        679********************97 PP
4zf-CCCH39.21.1e-12306331227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  GRMZM2G146514_P02 306 DQPECQFYMKTGDCKFGAVCKFHHPR 331
                        689*********************96 PP
5zf-CCCH36.48.5e-12351377127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+f+ r+G Ck+G++CkF H++
  GRMZM2G146514_P02 351 PGEPICSFYNRYGMCKFGPNCKFDHPM 377
                        5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2535280IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-45279IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-75578IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-55780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-45879IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24497125IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-697124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6100126IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5103125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7143172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3143171IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5149170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53304332IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5304331IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5307333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4310332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291350378IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7350377IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8352377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6354378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4355375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAAPSGGGGG GAGEGSSSAA AAATIGVHGV DQEAMWQMNL EEAMELGPYP ERVGEPDCSY  60
YMRTGMCRFG MTCKFNHPAD RKLAVAAARM KGEYPQRIGQ PECQYYLKTG TCKFGATCKF  120
HHPREKAAMA TRVQLNELGY PLRPNEKECA YYLRTGQCKF GSTCKFHHSQ PSTMMVAVRG  180
SVYSPGQSAT SPGQHAYQGA VTSWPLSRSA SFIASPRWPG HSSYAQVIVP PGLVQVPGWS  240
PYTAQIGSSS SEDQQRTPGA AQYYTGSRQS GTSIGDQGMF SSYQAGSVPV GLYAVQRENL  300
FPERPDQPEC QFYMKTGDCK FGAVCKFHHP RERIIPTPNC ALSPLGLPLR PGEPICSFYN  360
RYGMCKFGPN CKFDHPMGNA MYGQAPSPAS EAPAPRRMLA HVPPSHPEAS PDGGSGRSRR  420
IAHSDSQQIP SGERSAEREA S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847110.0cell culture| ear| endosperm| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G146514
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G146514_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636430.0BT063643.1 Zea mays full-length cDNA clone ZM_BFc0089D01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676803.10.0zinc finger CCCH domain-containing protein 33 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLC0P5S40.0C0P5S4_MAIZE; Uncharacterized protein
STRINGGRMZM2G146514_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]