PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148220_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 145aa    MW: 17069.8 Da    PI: 9.6721
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148220_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.8e-24959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskR+ g++KK +E+ +LCda++ vi+fs +g++yeyss
  GRMZM2G148220_P01  9 KKIENPTNRQVTFSKRQMGLFKKENEVAILCDAQIGVIVFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box423.8e-15851441473
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                        +++  qe++++k+e + L+    +++ edL s s ++L +Leqq+e sl k+R +K+ell
  GRMZM2G148220_P01  85 QQKIVQEMTRMKDERNRLRMIMAQYMAEDLASFSAQDLSNLEQQIEFSLYKVRLRKQELL 144
                        68999*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.422161IPR002100Transcription factor, MADS-box
CDDcd002655.48E-34276No hitNo description
SuperFamilySSF554554.19E-27279IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1281144IPR002487Transcription factor, K-box
PROSITE profilePS5129710.25285145IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRQMGLFK KENEVAILCD AQIGVIVFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN RLRMIMAQYM AEDLASFSAQ  120
DLSNLEQQIE FSLYKVRLRK QELLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15160160Myocyte-specific enhancer factor 2B
1tqe_Q1e-15160160Myocyte-specific enhancer factor 2B
1tqe_R1e-15160160Myocyte-specific enhancer factor 2B
1tqe_S1e-15160160Myocyte-specific enhancer factor 2B
6byy_A1e-15160160MEF2 CHIMERA
6byy_B1e-15160160MEF2 CHIMERA
6byy_C1e-15160160MEF2 CHIMERA
6byy_D1e-15160160MEF2 CHIMERA
6bz1_A1e-15160160MEF2 CHIMERA
6bz1_B1e-15160160MEF2 CHIMERA
6bz1_C1e-15160160MEF2 CHIMERA
6bz1_D1e-15160160MEF2 CHIMERA
6c9l_A1e-15160160Myocyte-specific enhancer factor 2B
6c9l_B1e-15160160Myocyte-specific enhancer factor 2B
6c9l_C1e-15160160Myocyte-specific enhancer factor 2B
6c9l_D1e-15160160Myocyte-specific enhancer factor 2B
6c9l_E1e-15160160Myocyte-specific enhancer factor 2B
6c9l_F1e-15160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148220
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148220_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9754250.0EU975425.1 Zea mays clone 490157 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400356.11e-101MADS-box transcription factor 31
SwissprotQ84NC21e-88MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A1D6DZP08e-99A0A1D6DZP0_MAIZE; NAD(P)-binding Rossmann-fold superfamily protein
TrEMBLA0A1D6HRZ76e-99A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16
TrEMBLB4FN448e-99B4FN44_MAIZE; MADS transcription factor
STRINGAC233912.1_FGP0011e-100(Zea mays)
STRINGGRMZM2G135018_P011e-100(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]