PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148506_P02
Common NameZEAMMB73_822255
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 589aa    MW: 65171.4 Da    PI: 5.3914
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148506_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP39.11.2e-12138183958
            E2F_TDP   9 ltqk.flkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 
                        l+++ f+ l+++ + + + l+e+ak L    v  +rRRiYDi+NVLe++++
  GRMZM2G148506_P02 138 LSKQiFMVLYNRDNVESIGLDEAAKCL---GV--ERRRIYDIVNVLEGVGI 183
                        565515555555555************...**..***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013725.6E-6130233IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.11E-8134185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-12140185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.4E-10142183IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDVDSRMATE SDSDSDARGG SGFGSETPTA SSSPSVVSLA PTASSSPSPS THPTPRRTTA  60
RSRPSSRRWR APRPGDRPLA RGEALPCPSL NHVLPPPPST LPPHIPRTPR DEFVHARMLK  120
NDGFSHVIAE DRTDQVYLSK QIFMVLYNRD NVESIGLDEA AKCLGVERRR IYDIVNVLEG  180
VGIQQEDIVA FYWSFFYQTQ CHSFCRWSRN PNGVPLESLG YKQAGIPHLK WFGVEGQYNV  240
MCLSNQEQIV ELLECEKLEK KLQDPTAEPI CLPIEFLKAI TCNFSTEREL GRIRLASPHD  300
DCALVNAVEA IDISAWFYDM LNPGENSAAV GYLIVDTNGG LNQMRMVYTS CLRKVETTSS  360
HLLCCFPANP AAHVWSRSHE HSEAGTAHFK LHVCSVMALD HTTILYHSGD LPPEFENIMI  420
FSGAETESDI APPVLEENKD DVVSATKTAK SLDGSALKTG QEEEGPEEAD ATEKAMEAVD  480
NVVKSLDPEV ESKEMQKQQP QDYNSISLRK LKATHKKYII TAKEEEVTEG KRLPLEEVLG  540
TSNFIHIEPV RMTSSLKVTE MLRSSNGIQH VPCAAISALI SRAGNANWN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1002721e-139cell culture| ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148506
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148506_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5309510.0AY530951.1 Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G148506_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-13DP-E2F-like 1