PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149219_P01
Common NameLOC100277808, Z477F24.6
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 99aa    MW: 11218.7 Da    PI: 10.0582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149219_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.42.6e-22360258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58
                       +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp   + i+Y g H+h
  GRMZM2G149219_P01  3 EDGYEWKKYGQKFIKNIQKMRSYFRCRHRLCGAKKKVEWHPRDPGgDLRIVYDGAHQH 60
                       7***************************************99985269********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.121163IPR003657WRKY domain
SMARTSM007741.9E-22262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-23263IPR003657WRKY domain
SuperFamilySSF1182904.58E-20263IPR003657WRKY domain
PfamPF031062.8E-20360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MPEDGYEWKK YGQKFIKNIQ KMRSYFRCRH RLCGAKKKVE WHPRDPGGDL RIVYDGAHQH  60
GPPPLAAPPG GHGQMQGGGA SDSNRYELCT QYFGGARSR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149219
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149219_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706331e-167EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348229.15e-70uncharacterized protein LOC100277808
TrEMBLA0A317YDJ26e-68A0A317YDJ2_MAIZE; Putative WRKY transcription factor 13
TrEMBLQ6JAD46e-68Q6JAD4_MAIZE; Putative DNA-binding protein
STRINGGRMZM2G149219_P011e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-12WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]