PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149347_P01
Common NameZm.124968
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 318aa    MW: 34406 Da    PI: 7.5004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149347_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.72.5e-15245269226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ktelC+ + +tGtC+yG++C+FaHg
  GRMZM2G149347_P01 245 KTELCNKWEETGTCPYGNQCQFAHG 269
                        9***********************8 PP
2zf-CCCH19.81.4e-06282307126
                        --S---SGGGGTS.--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                        ykte Cr  ++ G  C+yG rC+F H+
  GRMZM2G149347_P01 282 YKTEVCRMVLA-GvVCPYGHRCHFRHS 307
                        9**********.66**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-18238276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10240275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272243271IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-8243270IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-12245269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-11277307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8278308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131281309IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4281308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVVLAPAQH DGLHAAFGPN PFDIGVGGDG RFSSSLSSLG GDRFCGYSTT ASLFVNSPGL  60
SSPSPRADSL SRGSSDSGSV VDDGDDAAAT AASVAERRLR LARLALQYQE VVNRFELCLS  120
YLADAINEAA ALRQENDELR VANEYLARRI NVVGGRLADE FSGLRLAEEH TTPPPLSPLP  180
AAPVMPKSIS VRSPGYLKMV QNGKHRASKP TKGSRVLVGM EGGVKEEEKL NGGLQFEVYN  240
QGMLKTELCN KWEETGTCPY GNQCQFAHGI AELRPVIRHP RYKTEVCRMV LAGVVCPYGH  300
RCHFRHSITP ADLFLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-23245307567Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149347
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149347_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9592350.0EU959235.1 Zea mays clone 212775 nucleic acid binding f mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148404.10.0nucleic acid binding f
SwissprotQ6L5G11e-100C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLB6T2M00.0B6T2M0_MAIZE; Nucleic acid binding f
STRINGGRMZM2G149347_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-55C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]