PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150680_P02
Common NameLOC100381651, ZEAMMB73_846054
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 191aa    MW: 20973.1 Da    PI: 6.1449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150680_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17115160147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +g+WT eEd +l d v  +G g+W+++a+ ++ gR +kqc++rw ++
  GRMZM2G150680_P02 115 KGPWTMEEDSILRDMVMHHGEGRWSLVAQSLP-GRIGKQCRERWINH 160
                        79******************************.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-24109168IPR009057Homeodomain-like
PROSITE profilePS5129425.41110165IPR017930Myb domain
SuperFamilySSF466894.56E-18110167IPR009057Homeodomain-like
SMARTSM007171.8E-14114163IPR001005SANT/Myb domain
PfamPF002492.1E-16115160IPR001005SANT/Myb domain
CDDcd001675.44E-15117161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MESDESAFLN NMLAPPMAPD KRTKRYFASS SHGHILFEQD LLATSSMQAS DAQLMGDPLE  60
ARSLVASIGM TPAGFEMPEG EILSRGYHAL GGTPVDIAPA PQPQIESSNK PTAFKGPWTM  120
EEDSILRDMV MHHGEGRWSL VAQSLPGRIG KQCRERWINH VDPNIKVKSL HLLFLSLLIC  180
MACSIQFLAA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gvd_A6e-17115163351MYB PROTO-ONCOGENE PROTEIN
1mbg_A8e-17115163351MYB PROTO-ONCOGENE PROTEIN
1mbh_A8e-17115163351C-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.195870.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150680
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150680_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618820.0BT061882.1 Zea mays full-length cDNA clone ZM_BFb0194A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167937.11e-118uncharacterized LOC100381651
TrEMBLC0HHS61e-117C0HHS6_MAIZE; Myb domain protein 118
STRINGGRMZM2G150680_P011e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.15e-20myb domain protein 3r-3