PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150841_P03
Common NameLOC100193196
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 57aa    MW: 6253.21 Da    PI: 10.3889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150841_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-111445132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       rg W++eEd++lv+ ++++G g+W+++++  g
  GRMZM2G150841_P03 14 RGLWSPEEDDKLVNHIAKYGHGCWSSVPKLAG 45
                       789**************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.37E-9945IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13943IPR009057Homeodomain-like
PROSITE profilePS5129411.849957IPR017930Myb domain
PfamPF002492.7E-91445IPR001005SANT/Myb domain
CDDcd001673.51E-71746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MARRTSGPKK KLRRGLWSPE EDDKLVNHIA KYGHGCWSSV PKLAGSSGIG LLAELSY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150841
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150841_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700795e-90AF470079.1 Zea mays P-type R2R3 Myb protein (Myb20) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131823.12e-24uncharacterized protein LOC100193196
RefseqXP_002461087.13e-24transcription factor MYB61
SwissprotQ8LPH66e-17MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1D6IKP06e-25A0A1D6IKP0_MAIZE; Transcription factor MYB46
TrEMBLA0A3L6E2F26e-25A0A3L6E2F2_MAIZE; Transcription factor MYB86
STRINGSb02g040480.11e-23(Sorghum bicolor)
STRINGGRMZM2G150841_P017e-24(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-19myb domain protein 86