PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G151689_P02
Common NameLOC100284355, ZEAMMB73_769323
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 234aa    MW: 24389.9 Da    PI: 9.6719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G151689_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-083257227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       kt+lC+ +     Ck G++C+FaHg+
  GRMZM2G151689_P02 32 KTRLCNKYNTAEGCKWGSKCHFAHGE 57
                       9***********************96 PP
2zf-CCCH375.6e-12200225127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC +f + G C +GdrC+FaHg+
  GRMZM2G151689_P02 200 FKTKLCENFNK-GSCTFGDRCHFAHGE 225
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-142662IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8123058IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-83061IPR000571Zinc finger, CCCH-type
SMARTSM003560.213057IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.84E-1497171IPR004088K Homology domain, type 1
SMARTSM003222.4E-9101171IPR004087K Homology domain
PROSITE profilePS5008414.32102166IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-14102170IPR004088K Homology domain, type 1
CDDcd001051.81E-12104166No hitNo description
PfamPF000135.0E-10104167IPR004088K Homology domain, type 1
SuperFamilySSF902293.4E-9198230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-17198231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131199226IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7199225IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9200225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTNLGGPPVP APPGRMPMGP GGPDGPPSPA LKTRLCNKYN TAEGCKWGSK CHFAHGEREL  60
GKPLQMDNSM GAPPMGPGPN GHFMPPPMPI PDMVPHSTFG ASATAKISVD ASLAGAIIGK  120
SGINTKHISR VTGAKLAIRD NEADPNHKNI ELEGTFDQIK HASAMVTELI VRISGKVPPQ  180
AKNNPGRGPG SHAGGPASNF KTKLCENFNK GSCTFGDRCH FAHGESELRK PAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.737280.0ear| embryo| endosperm| meristem| ovary| root| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G151689
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G151689_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635370.0BT063537.1 Zea mays full-length cDNA clone ZM_BFc0074M08 mRNA, complete cds.
GenBankBT0639250.0BT063925.1 Zea mays full-length cDNA clone ZM_BFc0120K02 mRNA, complete cds.
GenBankBT0878740.0BT087874.1 Zea mays full-length cDNA clone ZM_BFb0279J08 mRNA, complete cds.
GenBankEU9525980.0EU952598.1 Zea mays clone 1284141 mRNA sequence.
GenBankEU9680080.0EU968008.1 Zea mays clone 312808 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150722.11e-170zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ69XQ31e-126C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLC0P5G81e-169C0P5G8_MAIZE; Zinc finger CCCH domain-containing protein 52
TrEMBLC0P6K61e-169C0P6K6_MAIZE; Zinc finger CCCH domain-containing protein 52
TrEMBLK0DG491e-169K0DG49_MAIZE; C3H18 C3H type transcription factor (Fragment)
STRINGGRMZM2G151689_P011e-169(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-52C3H family protein