PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G152822_P01
Common NameLOC103632093
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 197aa    MW: 21227.7 Da    PI: 4.6013
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G152822_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB84.41.4e-2627116796
              NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                         +P   ++rim++vlP++++++  aket+++c+++f + +   a++ c+r++r ti++ddl+  +a+lG+ dyv+p++vyl+ yre+ ++
  GRMZM2G152822_P01  27 TIPKGTITRIMRQVLPQDSRVTGGAKETMDQCIVQFSTALVRAATQECRRDRRLTITADDLIVGFANLGLADYVQPMSVYLRLYRETVNN 116
                        689999********************************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-2119121IPR009072Histone-fold
SuperFamilySSF471134.84E-2124124IPR009072Histone-fold
PfamPF008082.1E-112888IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSKAQGSNDH QHEHEDPEGS KPLEEYTIPK GTITRIMRQV LPQDSRVTGG AKETMDQCIV  60
QFSTALVRAA TQECRRDRRL TITADDLIVG FANLGLADYV QPMSVYLRLY RETVNNQQQA  120
VAPPSPTVQR GTTTAVPPPP PNLTLQLGLP SVPDVTELAR DTDVYALWHG AAPAAGSTSA  180
SSVAPMPPPA ADGDEDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A7e-19281121397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G152822
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G152822_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652166.11e-144nuclear transcription factor Y subunit B-4
TrEMBLA0A1D6HV391e-142A0A1D6HV39_MAIZE; Nuclear transcription factor Y subunit B-6
STRINGGRMZM2G152822_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Representative plantOGRP1999422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-22nuclear factor Y, subunit B3