PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G152862_P02

Common Name

ZEAMMB73_932858

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

MIKC_MADS

Protein Properties

Length: 124aa MW: 14062.4 Da PI: 10.7154

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G152862_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.7	1.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+g+ KKA E+ vLCdaev v+ifss gkly+y+s GRMZM2G152862_P02 9 KRIENSTNRQVTFSKRRAGLVKKAREIGVLCDAEVGVVIFSSGGKLYDYCS 59 79***********************************************96 PP
2	K-box	22.7	4.2e-09	71	106	1	36
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 yq++sgk l+ +k+++l+ e++++kke++n+q ++R GRMZM2G152862_P02 71 YQTNSGKILWGEKHKNLSAEIDRVKKENDNMQIQLR 106 89999999************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.8E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.043	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.04E-41	2	80	No hit	No description
SuperFamily	SSF55455	1.44E-33	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD AEVGVVIFSS GGKLYDYCSP 60 RTSLSRILEK YQTNSGKILW GEKHKNLSAE IDRVKKENDN MQIQLRPVFL IQICSRSLAA 120 RALH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
6byy_A	3e-20	1	75	1	73	MEF2 CHIMERA
6byy_B	3e-20	1	75	1	73	MEF2 CHIMERA
6byy_C	3e-20	1	75	1	73	MEF2 CHIMERA
6byy_D	3e-20	1	75	1	73	MEF2 CHIMERA
6bz1_A	3e-20	1	75	1	73	MEF2 CHIMERA
6bz1_B	3e-20	1	75	1	73	MEF2 CHIMERA
6bz1_C	3e-20	1	75	1	73	MEF2 CHIMERA
6bz1_D	3e-20	1	75	1	73	MEF2 CHIMERA
6c9l_A	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	1	75	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.336	1e-173	ear\| endosperm\| ovary\| pedicel\| pericarp\| pollen\| shoot\| silk

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G152862

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in lodicules and stamens from early to late stage of flower development. {ECO:0000269\|PubMed:10945340, ECO:0000269\|Ref.1}.
Uniprot	TISSUE SPECIFICITY: Highly expressed in anthers and carpels. Expressed in pollen, tapetum and stigma. {ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G152862_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064585	0.0	BT064585.1 Zea mays full-length cDNA clone ZM_BFc0186B22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105137.1	8e-72	MADS29
Refseq	XP_020397915.1	5e-72	MADS29 isoform X1
Swissprot	Q40702	9e-67	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	C0P8G6	6e-86	C0P8G6_MAIZE; MADS29
STRING	GRMZM2G152862_P01	4e-71	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-49	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G152862_P02

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]