PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G153233_P01
Common NameARF2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 681aa    MW: 74543 Da    PI: 7.9244
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G153233_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23115216199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   
  GRMZM2G153233_P01 115 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL-- 202
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++ +el+v+++r 
  GRMZM2G153233_P01 203 RTEHGELCVGIRRV 216
                        559999*****985 PP
2Auxin_resp119.52.7e-39271354183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++ + +dp+rWpnS+Wr+L+
  GRMZM2G153233_P01 271 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASAQVADPIRWPNSPWRLLQ 354
                        688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-36106218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29111220IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-21114215No hitNo description
PROSITE profilePS5086312.746115217IPR003340B3 DNA binding domain
PfamPF023628.1E-22115215IPR003340B3 DNA binding domain
SMARTSM010191.1E-21115217IPR003340B3 DNA binding domain
PfamPF065074.3E-34271354IPR010525Auxin response factor
PROSITE profilePS5174518.88589667IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MKEVAEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGAAD LAGARALPSL  60
VLCSVTGVRF LADPETDEVF AKIRLVPVAP GEVEFREPDE FSVDPADARE KLSSFAKTLT  120
QSDANNGGGF SVPRYCAETI FPKLDYRADP PVQTVLAKDV HGEVWKFRHI YRGTPRRHLL  180
TTGWSTFVNQ KKLVAGDSIV FLRTEHGELC VGIRRVKRVS CGGMECMSGW NAPGYGALSA  240
FLKDEEGKMM KSHGGYMRGR GKVKITDVVN AASLAASGQP FEVVYYPRAS TPEFVVKAAS  300
VQNAMRNQWC PGMRFKMAFE TEDSSRISWF MGTIASAQVA DPIRWPNSPW RLLQVAWDEP  360
DLLQNVKCVN PWLVEIVSSI PPIHLGPFSP PRKKLRVPHH PDFPFDGQLL NPIFHGNPLG  420
PSNGGGALRC FSDIAPAGIQ GARHAQFGLP LTDRQLNKLH LGLFQGGGFK RRLDAITPPC  480
PISRGFVIGS APVDESVSCV LTIGTPRAAE RSDDRKKPHL MLFGKPILTE QQMSSRGSRE  540
TLSPEATGNS SDGSVQKTGN VSDGSGSSIC IGSSSRGREA SRLGFEFEAG HCKVFVESED  600
VGRTIDLSVF GSYEELYGQL ADMFGIEKAE VMSHLCYRDA AGAVKRTGDE PFCDFMKVAR  660
RLTIVESTEG RLQKPLVEYM A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-781037951392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.263450.0embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G153233
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Function -- GeneRIF ? help Back to Top
  1. The studies suggest that ZmArf2 has an active GTP-binding function, and plays a crucial role in growth and development in Arabidopsis through cell expansion mediated by cell expansion genes.
    [PMID: 26096810]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G153233_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604670.0BT060467.1 Zea mays full-length cDNA clone ZM_BFb0003E21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159132.10.0uncharacterized protein LOC100304210
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A317Y1S20.0A0A317Y1S2_MAIZE; Auxin response factor
TrEMBLC0HDR10.0C0HDR1_MAIZE; Auxin response factor
TrEMBLK0DCR00.0K0DCR0_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G153233_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Wang Q, et al.
    A maize ADP-ribosylation factor ZmArf2 increases organ and seed size by promoting cell expansion in Arabidopsis.
    Physiol Plant, 2016. 156(1): p. 97-107
    [PMID:26096810]