PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G153575_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 1021aa    MW: 110243 Da    PI: 6.3013
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G153575_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05458481323
                        ET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                        Cp  dCg +F r+++L+ H++  H
  GRMZM2G153575_P01 458 CPwlDCGDVFVRQESLQLHQSIrH 481
                        9999****************9888 PP
2trihelix361.8e-11709811186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkr.tses 75 
                        +W+++ +  L+ea++ ++   +r+klk  +W ++++ +                  +   ++p+qCk+k e+++kry+++++   +   + +
  GRMZM2G153575_P01 709 EWSESGIARLLEAYEAKWLLRNRAKLKWSDWVDIAREVsvhcaddaaaagkppgGVGSSAKTPNQCKNKVESMKKRYRAETAAVARAgPAAA 800
                        5**************************************************9977777799*****************98876665536778 PP

           trihelix  76 sstcpyfdqle 86 
                          ++++f +++
  GRMZM2G153575_P01 801 GPSWRFFARMD 811
                        889*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642456482IPR007087Zinc finger, C2H2
PROSITE patternPS000280458481IPR007087Zinc finger, C2H2
PfamPF000915.6E-7524588IPR003008Tubulin/FtsZ, GTPase domain
Gene3DG3DSA:3.40.50.14401.6E-9528590IPR003008Tubulin/FtsZ, GTPase domain
SuperFamilySSF524906.18E-8529589IPR003008Tubulin/FtsZ, GTPase domain
PfamPF138375.6E-13707811No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MEGAAVSSLT IALEKQSRLL RAICDRLSAQ DAPWASLESA TTEHLDAVEA AAATRVGAPE  60
SWRPHVELRY EEPVTADNWG GLFEHSGVIT AEVGSSPEEV ITDDWGDLFC RGVDSDEQLC  120
DSLHSASIRS LEEAFAREDP IPSRADLGIQ LSATTERLDA VEAAVATHVD ALESWRLRVE  180
ARASVHLCGF FDGTDVTKLP TTCSTSGLTT KLAMAHYGSH LPGDKGGSAA SWQPVRSLAL  240
AVHVESQCQQ ASSACGTPAM ASMGKMSVGD LTEADLKGKH IFVCAEIHEP PDENQNSTND  300
ILSTSCDTAV DQRRTECLGS TGRRLGCQPA TPRECMLSVI PGSATAVDVV KRCQRLFPLA  360
DSTGAFDATV AARVTQMAVS SPARNTTPTG SSPESTACWF PCDNKSSKQL QRGGPLLDGS  420
DGASFRVGMQ LRQLSGCYQC HMVVVPVSGS VSMRATICPW LDCGDVFVRQ ESLQLHQSIR  480
HAVSGLGTMA TNGRAHDVEG KEEYDSVARL TRLLMSHQDL TALPWYDNKD AFNTFYNKTG  540
SSKQVARAIF INPEHGLYPE IFHLEQLILG KEDTTNNFSR GYHTIGKGMV LVANNFGNDL  600
LTRRSEIKQP WPPPQELACL GLNIMVADTS APGVRMPRWP PPPRPPSPTP GRQVLSSRTV  660
SHGRAIAVAP VGPLKPRNSG PLPGSRAMDG LPDADAAPLA AAPPQKRDEW SESGIARLLE  720
AYEAKWLLRN RAKLKWSDWV DIAREVSVHC ADDAAAAGKP PGGVGSSAKT PNQCKNKVES  780
MKKRYRAETA AVARAGPAAA GPSWRFFARM DGLLKGPPVG PDQVQQQQAL TNSRIDLRAP  840
AKPEAEAEAD FAAQLRDAVP GAFTDLMNMD ANGAVPDKAE KADNSMQKES GPADSDANVS  900
SPRSKVANED VEEVEDKVWD RPKKRKSTDF DIAKSIELLA SSFLKVEQAR MEMYRETERM  960
RVEAEIKKGE MELKRTEIMA KTHLQIARLF ARKLKQSSGK NGGSSSVTAE VDTLTKKGEN  1020
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ubq_A4e-1353059047115Tubulin alpha chain
5ubq_C4e-1353059047115Tubulin alpha chain
5ubq_E4e-1353059047115Tubulin alpha chain
5ucy_A4e-1353059047115Tubulin alpha chain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G153575
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G153575_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9492421e-167EU949242.1 Zea mays clone 399971 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G153575_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-30sequence-specific DNA binding transcription factors