PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154182_P03
Common NameZEAMMB73_390777, Zm.5914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 192aa    MW: 21148.1 Da    PI: 9.7694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154182_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-53231531129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+d e+v++yL++kv ++++++ ++i+e+d++k+ePwdLp+k+k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdkev
  GRMZM2G154182_P03  23 LPPGFRFHPSDFEIVSFYLTNKVLNTRFTC-TAITEADLNKIEPWDLPSKAKMGEKEWYFFYQKDRKYPTGLRANRATEAGYWKATGKDKEV 113
                        79**************************99.88***************99999*************************************** PP

                NAM  93 lskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                        +++ + +   vg+kktLvfy+grap+g kt+Wvmheyrle
  GRMZM2G154182_P03 114 YNAAEGVavlVGMKKTLVFYRGRAPRGDKTNWVMHEYRLE 153
                        **83333455****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5715157IPR003441NAC domain
PROSITE profilePS5100551.57323183IPR003441NAC domain
PfamPF023652.1E-2724152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAADQQPQLQ EEMNDAAGGG LRLPPGFRFH PSDFEIVSFY LTNKVLNTRF TCTAITEADL  60
NKIEPWDLPS KAKMGEKEWY FFYQKDRKYP TGLRANRATE AGYWKATGKD KEVYNAAEGV  120
AVLVGMKKTL VFYRGRAPRG DKTNWVMHEY RLEGSGRLPA GLASATGSAA ANAAAALKAS  180
AYKVRCVAVA VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-482115213140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.59140.0embryo| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154182
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154182_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611070.0BT061107.1 Zea mays full-length cDNA clone ZM_BFb0104E18 mRNA, complete cds.
GenBankJX4284800.0JX428480.1 Zea mays subsp. mays clone pUT3077 NAC130 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295428.11e-132NAC domain-containing protein 100
RefseqXP_008655529.21e-132NAC domain-containing protein 100 isoform X1
SwissprotQ9FK442e-71NAC87_ARATH; NAC domain-containing protein 87
TrEMBLC0HFK11e-118C0HFK1_MAIZE; Uncharacterized protein
TrEMBLK0DF681e-118K0DF68_MAIZE; NAC130 NAC type transcription factor (Fragment)
STRINGGRMZM2G154182_P011e-132(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.27e-74Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]