PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G155816_P01
Common NameZm.25949
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 160aa    MW: 18646.2 Da    PI: 9.5314
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G155816_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.3e-53101411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                        +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+evd++k+ePwdL+      +++ ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+
  GRMZM2G155816_P01  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREVDLNKLEPWDLKDrcriGTAEPQDEWYFFSHKDRKYPTGTRTNRATTAGFWKATGR 100
                        69****************************.9***************8435332233455******************************** PP

                NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        dk+++    g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  GRMZM2G155816_P01 101 DKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141
                        *****9767888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-556145IPR003441NAC domain
PROSITE profilePS5100553.78710160IPR003441NAC domain
PfamPF023651.7E-2811141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MHPSCSPLAV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREVDLNKL EPWDLKDRCR  60
IGTAEPQDEW YFFSHKDRKY PTGTRTNRAT TAGFWKATGR DKAIFLGNAG RRIGLRKTLV  120
FYTGRAPHGK KTDWIMHEYR LNDDNVEVPP ITVSTQRTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47814115142NO APICAL MERISTEM PROTEIN
1ut4_B2e-47814115142NO APICAL MERISTEM PROTEIN
1ut7_A2e-47814115142NO APICAL MERISTEM PROTEIN
1ut7_B2e-47814115142NO APICAL MERISTEM PROTEIN
3swm_A3e-47814118145NAC domain-containing protein 19
3swm_B3e-47814118145NAC domain-containing protein 19
3swm_C3e-47814118145NAC domain-containing protein 19
3swm_D3e-47814118145NAC domain-containing protein 19
3swp_A3e-47814118145NAC domain-containing protein 19
3swp_B3e-47814118145NAC domain-containing protein 19
3swp_C3e-47814118145NAC domain-containing protein 19
3swp_D3e-47814118145NAC domain-containing protein 19
4dul_A2e-47814115142NAC domain-containing protein 19
4dul_B2e-47814115142NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.259490.0cell culture| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G155816
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G155816_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530450.0EU953045.1 Zea mays clone 1377565 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645562.11e-112NAC domain-containing protein 76
SwissprotQ5Z6B61e-91NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A1D6H5I51e-110A0A1D6H5I5_MAIZE; Protein SOMBRERO
STRINGGRMZM2G155816_P011e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-73NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]