PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G157197_P01
Common NameLOC100285677
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 219aa    MW: 23088.6 Da    PI: 5.2706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G157197_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00027193123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C + F ++  L  H++ H
  GRMZM2G157197_P01 71 FTCNYCQRKFFSSQALGGHQNAH 93
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-66898No hitNo description
PROSITE profilePS5015711.3237198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNSKEMCQEP CDELSEISSQ EASNSSGLVS LDLTLTVAAA AAAESSTTDN SNSGGTPADA  60
AAVAREPSRV FTCNYCQRKF FSSQALGGHQ NAHRRERTLA RRTLRLDAAG PYGYYADVAS  120
LPLYGSGLYP IGIQAHASMA AHPEQQQRHE DAAELRPARG LLSPMPFLVA DEAEMSFGWP  180
GSFRPATAVA PAPAGSAVLN SAGGVAVHAR EEPDLTLRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.923440.0sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G157197
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G157197_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882120.0BT088212.1 Zea mays full-length cDNA clone ZM_BFc0067J23 mRNA, complete cds.
GenBankEU9769440.0EU976944.1 Zea mays clone 994515 zinc finger protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001300990.11e-160zinc finger protein 7
RefseqXP_008680366.11e-160zinc finger protein 7 isoform X1
RefseqXP_008680370.11e-160zinc finger protein 7 isoform X1
RefseqXP_023158235.11e-160zinc finger protein 7 isoform X1
SwissprotQ392636e-28ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A317YIC01e-158A0A317YIC0_MAIZE; Zinc finger protein 4
TrEMBLB6UI791e-158B6UI79_MAIZE; Zinc finger protein 1
STRINGGRMZM2G157197_P011e-159(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-17zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]