PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G157219_P02
Common NameLOC100272931
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 343aa    MW: 36918.9 Da    PI: 10.5299
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G157219_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.2e-1437123186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +W++ e+ aL+ a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++ +++        s ++yf +l
  GRMZM2G157219_P02  37 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDIQCKNRVDTLKKKYKAELARNAP------SAWSYFPEL 122
                        7*****************************************999999999********************999996......57*****99 PP

           trihelix  86 e 86 
                        +
  GRMZM2G157219_P02 123 D 123
                        8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2535125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEVREMAMAA AAAAAASGGG GVKLPPPNPN LPYREDCWSD GETAALVSAW GSRYVELNRG  60
NLRQKQWQEV ADAVNSRRGA SARRRPPRTD IQCKNRVDTL KKKYKAELAR NAPSAWSYFP  120
ELDRLVGPTL SASASKRPLA SLPPQFALPM HPPAVRRPPS PSPSSSSPPQ PPMALPLPNY  180
RRGSPLPAAA LIQKEAAAAA AAASDSEDSD DAAGGNNHKL PRSPSRSVSS LSASNKKRCR  240
DEAGSSADKG FRELARAIEA FAEMYERVES AKQKHVVEME RQRIEFLKQL EVKRMENFVD  300
AHVKLARAKR TKKTTGGAAD GAGGMELVAT VAALPFVSTS TFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.852260.0endosperm| meristem| ovary| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G157219
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G157219_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398060.0BT039806.1 Zea mays full-length cDNA clone ZM_BFc0045P15 mRNA, complete cds.
GenBankBT0433870.0BT043387.2 Zea mays full-length cDNA clone ZM_BFc0175K05 mRNA, complete cds.
GenBankEU9671220.0EU967122.1 Zea mays clone 299578 6b-interacting protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140855.10.0Trihelix transcription factor
RefseqXP_008647515.10.0trihelix transcription factor isoform X1
TrEMBLA0A3L6EDA30.0A0A3L6EDA3_MAIZE; Trihelix transcription factor ASIL2
TrEMBLB4FRR80.0B4FRR8_MAIZE; 6b-interacting protein 1
STRINGGRMZM2G157219_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-29sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]